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Category: Notebooks

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Speed up your machine learning work with GPUs 

Terra has offered the ability to use GPUs in workflows for quite some time, yet many of you have told us that you also need to be able to run GPU-enabled computations interactively, so we’re really excited to roll out GPU support for Jupyter Notebooks. 

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Tracking your workflow compute costs in Terra

This blog covers some key concepts and practical solutions for tackling the question of compute costs incurred by running workflows, which are typically the hardest to predict among the various types of cloud costs. 

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How Terra fits within the AnVIL ecosystem

We’ve mentioned the AnVIL project a number of times in recent blog posts — covering topics such as Dockstore, RStudio, Galaxy, and DRS URIs — so it feels like it’s high time that we gave you some more context. Specifically, we thought it might be useful to reiterate the key goals of the AnVIL project and explain briefly how Terra fits in with the other AnVIL components.

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Spotlight on PANOPLY, a scalable framework for cancer proteogenomics

PANOPLY is a computational framework for applying statistical and machine learning algorithms to transform multi-omic data from cancer samples into biologically meaningful and interpretable results. In this post, D. R. Mani explains how his team is leveraging Terra to make PANOPLY accessible to a wide range of researchers.

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Seurat package now included by default in R-based cloud environments

Terra offers an assortment of cloud environments pre-configured for interactive analysis with popular tools and packages. In response to popular demand, we recently updated Terra’s R-based notebook environments to include the latest version of Seurat, a widely-used R package for multimodal single-cell analysis.

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Community-maintained Notebook environments in Terra

Ever since we introduced Jupyter Notebooks in Terra, we’ve sought to provide default environments pre-loaded with software packages that are likely to interest you, to minimize the amount of setup necessary to get your work going. However, we’ve found that there’s a huge amount of variation in the needs and preferences of researchers, from […]

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