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Category: Community

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Join us at the Bioinformatics Open Source Conference, July 29-30

The Broad Institute’s Data Sciences Platform is sponsoring this year’s Bioinformatics Open Source Conference (BOSC 2021), taking place virtually July 29-30. Abstracts are due Thursday, May 6, 2021 (late posters June 3). BOSC is a great way to get involved in the bioinformatics community; we’re proud to support this event and we hope to see many of you there virtually. 

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Try out Galaxy in Terra via AnVIL

Last week I gave you a tour of the RStudio integration that we’re building into Terra in the context of the AnVIL project, in collaboration with the Bioconductor team. This week I want to introduce you to the Galaxy integration, another great collaboration forged on the AnVIL that involves members of the core Galaxy team. […]

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A must-read review paper for getting started with bioinformatics workflows

New year, new partnership… and a new blog series focusing on highlighting papers that we think will be of interest to many of you. For this first iteration, we review a review paper (review-ception!) fresh off the virtual press over at GigaScience, coming out of C. Titus Brown’s lab at UC Davis, on the topic of workflow systems. 

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Community-maintained Notebook environments in Terra

Ever since we introduced Jupyter Notebooks in Terra, we’ve sought to provide default environments pre-loaded with software packages that are likely to interest you, to minimize the amount of setup necessary to get your work going. However, we’ve found that there’s a huge amount of variation in the needs and preferences of researchers, from […]

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Experience GA4GH Interoperability standards in action

Today is the second day of the 8th plenary meeting of GA4GH, aka the Global Alliance for Genomics and Health, an international collaborative effort that has been driving the development of standards for infrastructure, policy, and security in the genomics field for nearly a decade. […]

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Workflow worries to working WDLs in under a week

How insightful feedback about the GATK showcase led to a flurry of updates and the creation of a suite of format conversion tools. Last June, just as we were putting the final touches on the teaching materials for a 4-day GATK workshop that we were planning to run entirely on Terra, we received […]

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